Is the Simulate SimBiology Model skill free?

Yes. The skill itself is free from matlab/matlab-agentic-toolkit. SkillProof publishes the install command and an independent test verdict at no cost.

What is the Simulate SimBiology Model SkillProof Score?

9.6/10 — installs cleanly 5/5, triggers reliably 5/5, output vs. baseline 9/10, docs & honesty 5/5.

How do I install Simulate SimBiology Model?

Copy the install command from this page, run it in your terminal, and restart Claude Code. Skills live in ~/.claude/skills/ (global) or .claude/skills/ inside a project.

Can I use Simulate SimBiology Model with Cursor, Copilot, Gemini CLI, Codex or other AI tools?

The SKILL.md format is native to Claude (Claude Code, Desktop, claude.ai). The instructions inside adapt to other assistants: Cursor rules, GitHub Copilot instructions, Windsurf rules, Custom GPTs, AGENTS.md for OpenAI Codex, and GEMINI.md for Google Gemini CLI — our conversion guides cover each, and the free converter on the tools page does the wrapping for you.

Simulate SimBiology Model

Runs SimBiology ODE/SSA simulations and sensitivity analysis while dodging known unit and logging bugs.

by matlab · matlab/matlab-agentic-toolkit

Tested · Works

Install — copy the command Download source ↗

Test report

Verdict: Tested · Works
Score: 9.6/10
Tested: Jul 13, 2026
Environment: Claude Code 2.x (agent harness)
Upstream re-checked: Aug 10, 2026 · 8f1aac4

Catches the SimBiology gotcha most hand-written scripts miss: without cs.TimeUnits='hour' paired with UnitConversion, a 24-unit StopTime silently simulates 24 seconds, and constant parameters used inside ratio observables (e.g. Drug./Vd) vanish unless explicitly added to StatesToLog.

Scored on four weighted criteria — install, triggering, output vs. baseline, docs. How scoring works

Installs cleanly 5/5
Triggers reliably 5/5
Output vs. baseline 9/10
Docs & honesty 5/5

What Simulate SimBiology Model does

Drives SimBiology model simulation — deterministic ODE, stochastic SSA, scenario sweeps, and Sobol/Morris sensitivity analysis — and encodes eight hard-won correctness rules (time-unit pairing, StatesToLog for constant parameters, MassAction-only SSA reactions, wall-clock guards). Triggers on run/simulate/predict/what-if/sensitivity requests against a SimBiology model, and defers to sibling skills for model construction or parameter fitting.

How to install Simulate SimBiology Model

git clone https://github.com/matlab/matlab-agentic-toolkit
cd matlab-agentic-toolkit
mkdir -p ~/.claude/skills
cp -r skills-catalog/computational-biology/matlab-simulate-simbiology-model ~/.claude/skills/matlab-simulate-simbiology-model

Skills live in ~/.claude/skills/ (global) or .claude/skills/ (per-project). Restart Claude Code after installing.

Commands — how to trigger Simulate SimBiology Model

/matlab-simulate-simbiology-model Runs SimBiology ODE/SSA simulations and sensitivity analysis while dodging known unit and logging bugs.

It also activates on plain-language prompts like these:

Run a stochastic SSA simulation on this SimBiology model
Simulate this pharmacokinetic model and check the parameter sensitivity
Do a Sobol sensitivity analysis on my SimBiology dosing model

Frequently asked questions

Is the Simulate SimBiology Model skill free?: Yes. The skill itself is free from matlab/matlab-agentic-toolkit. SkillProof publishes the install command and an independent test verdict at no cost.
Does Simulate SimBiology Model work with Claude Code?: We tested it with Claude Code 2.x (agent harness) on Jul 13, 2026. Verdict: Tested · Works. Catches the SimBiology gotcha most hand-written scripts miss: without cs.TimeUnits='hour' paired with UnitConversion, a 24-unit StopTime silently simulates 24 seconds, and constant parameters used inside ratio observables (e.g. Drug./Vd) vanish unless explicitly added to StatesToLog.
What is the Simulate SimBiology Model SkillProof Score?: 9.6/10 — installs cleanly 5/5, triggers reliably 5/5, output vs. baseline 9/10, docs & honesty 5/5.
How do I install Simulate SimBiology Model?: Copy the install command from this page, run it in your terminal, and restart Claude Code. Skills live in ~/.claude/skills/ (global) or .claude/skills/ inside a project.
Can I use Simulate SimBiology Model with Cursor, Copilot, Gemini CLI, Codex or other AI tools?: The SKILL.md format is native to Claude (Claude Code, Desktop, claude.ai). The instructions inside adapt to other assistants: Cursor rules, GitHub Copilot instructions, Windsurf rules, Custom GPTs, AGENTS.md for OpenAI Codex, and GEMINI.md for Google Gemini CLI — our conversion guides cover each, and the free converter on the tools page does the wrapping for you.