Deeppapernote

Turns one paper (arXiv/DOI/PDF) into a structured, evidence-grounded Obsidian reading note

Tested · Works

Test report

Verdict
Tested · Works
Score
9.2/10
Tested
Jul 21, 2026
Environment
Claude Code 2.x (agent harness)
Upstream re-checked
Aug 10, 2026 · ad0f18f

Cloned the repo and ran scripts/run_pipeline.py on arXiv:1508.06576 under Python 3.13 with PyMuPDF installed; it resolved identity, fetched the real 16-page PDF, extracted 393 lines of full text, and built an 80KB paper_bundle.json with a writing_contract requiring 12 Chinese sections. For OUTPUT I wrote two notes and ran scripts/lint_note.py on both: my free-form baseline failed passes_basic_structure, passes_style_gate and passes_substantive_content with all 12 required sections reported missing; the skill-structured note (YAML frontmatter, 核心信息 metadata block, faithful 原文摘要翻译, 创新点, 机制流程, 局限) passed all three gates with missing_sections=[]. Both failed passes_plan_gate because I did not author the separate note_plan JSON that the workflow expects. Security scan found no curl|sh, base64 blobs, or exfiltration; network calls target only arXiv/Crossref/OpenAlex/Semantic Scholar and the Semantic Scholar key is read from env.

Scored on four weighted criteria — install, triggering, output vs. baseline, docs. How scoring works

  • Installs cleanly 5/5
  • Triggers reliably 5/5
  • Output vs. baseline 8/10
  • Docs & honesty 5/5

What Deeppapernote does

Runs a deterministic Python pipeline that resolves a paper's identity, fetches the PDF, extracts full-text sections and figures, and builds a synthesis bundle the model uses to write a deep Chinese-language Markdown note with a fixed section contract, then lints it against structure and style gates. Triggers when the user gives a paper title, DOI, URL, arXiv ID, Zotero item, or local PDF and wants a polished Obsidian note rather than an abstract rewrite. Handles one paper at a time; not for multi-paper literature reviews or reading lists.

How to install Deeppapernote

git clone --depth 1 https://github.com/917Dhj/DeepPaperNote.git /tmp/deeppapernote-src
mkdir -p ~/.claude/skills
cp -R /tmp/deeppapernote-src/skills/deeppapernote ~/.claude/skills/deeppapernote
# Deps: Python >=3.10, plus `pip install PyMuPDF certifi` (PyMuPDF/fitz does the PDF text+figure extraction).
# Optional: pytesseract+Pillow for OCR of scanned PDFs; a local Zotero desktop (Local API) for library-first resolution.
# Plugin alternative: `npx skills add 917Dhj/DeepPaperNote` (installs as a multi-agent plugin; also bundles companion skill `paper-glossary`).
# Run the deterministic pipeline: python3 ~/.claude/skills/deeppapernote/scripts/run_pipeline.py --input "arXiv:1508.06576" --workdir /tmp/dpn-run --zotero-mode off
# Output note (zh-CN) requires the model to write from the generated synthesis_bundle.json; lint with scripts/lint_note.py.

Skills live in ~/.claude/skills/ (global) or .claude/skills/ (per-project). Restart Claude Code after installing.

Commands — how to trigger Deeppapernote

  • /deeppapernote Turns one paper (arXiv/DOI/PDF) into a structured, evidence-grounded Obsidian reading note

It also activates on plain-language prompts like these:

  • Create a deep-reading note for this arXiv paper
  • Summarize this paper's DOI into my Obsidian vault
  • Write an evidence-based note on this PDF paper

Frequently asked questions

Is the Deeppapernote skill free?
Yes. The skill itself is free from 917Dhj/DeepPaperNote. SkillProof publishes the install command and an independent test verdict at no cost.
Does Deeppapernote work with Claude Code?
We tested it with Claude Code 2.x (agent harness) on Jul 21, 2026. Verdict: Tested · Works. Cloned the repo and ran scripts/run_pipeline.py on arXiv:1508.06576 under Python 3.13 with PyMuPDF installed; it resolved identity, fetched the real 16-page PDF, extracted 393 lines of full text, and built an 80KB paper_bundle.json with a writing_contract requiring 12 Chinese sections. For OUTPUT I wrote two notes and ran scripts/lint_note.py on both: my free-form baseline failed passes_basic_structure, passes_style_gate and passes_substantive_content with all 12 required sections reported missing; the skill-structured note (YAML frontmatter, 核心信息 metadata block, faithful 原文摘要翻译, 创新点, 机制流程, 局限) passed all three gates with missing_sections=[]. Both failed passes_plan_gate because I did not author the separate note_plan JSON that the workflow expects. Security scan found no curl|sh, base64 blobs, or exfiltration; network calls target only arXiv/Crossref/OpenAlex/Semantic Scholar and the Semantic Scholar key is read from env.
What is the Deeppapernote SkillProof Score?
9.2/10 — installs cleanly 5/5, triggers reliably 5/5, output vs. baseline 8/10, docs & honesty 5/5.
How do I install Deeppapernote?
Copy the install command from this page, run it in your terminal, and restart Claude Code. Skills live in ~/.claude/skills/ (global) or .claude/skills/ inside a project.
Can I use Deeppapernote with Cursor, Copilot, Gemini CLI, Codex or other AI tools?
The SKILL.md format is native to Claude (Claude Code, Desktop, claude.ai). The instructions inside adapt to other assistants: Cursor rules, GitHub Copilot instructions, Windsurf rules, Custom GPTs, AGENTS.md for OpenAI Codex, and GEMINI.md for Google Gemini CLI — our conversion guides cover each, and the free converter on the tools page does the wrapping for you.